Students & Staff


RESEARCH ASSOCIATE


Dr. Daniel E. Sanchez

I use cutting edge genetic and computational tools to study conservation ecology and evolution in wildlife systems. After helping develop Species from Feces in the laboratory, I focused my research on understanding the historical biogeography of the spotted bat as well as designing a metabarcode assay for identifying diet of the endangered New Mexico meadow jumping mouse. Some of the skills that I employ for these projects include next-generation sequencing, microbiome bioinformatics, phylogenetics, ecological niche modeling, and bacterial and fungal microbiology.

STUDENTS

Morgan Hughes

Ph.D. Student

2022 Awards: NSF Graduate Research Fellowship, NAU President's Fellowship, Conservation Nation Grant

2023 Awards: Animal Behavior Society Student Research Grant

During my PhD At NAU, I will be investigating the seasonal dynamics and landscape ecology of bat communities in the highly fragmented equatorial dry forests of Peru and Ecuador. Maintaining population connectivity in these ecosystems is essential for ecosystem functioning and community resilience in the face of climate change. Through stable isotope analyses and phylogenetics of bats/their parasites, I will describe habitat use across seasons and population connectivity between forests. Through this work, I hope to understand the impact of landscape connectivity on community composition and functioning in highly seasonal environments.  

Colin J. Sobek

Ph.D. Student, University of Adelaide

2022 Award: Nature Foundation South Australia

2023 Award: Ecological Society of Australia's Holsworth Wildlife Research Endowment Grant 

I am pursuing my PhD at the University of Adelaide with Dr. Jeremy Austin. Dr. Walker is an external supervisor. For my PhD I am using genetic techniques for the conservation and management of the northern hairy-nosed wombat (Lasiorhinus krefftii), one of the most endangered mammals in the world. I am 1) building a phylogeny of northern hairy-nosed wombats and their congener the southern hairy-nosed wombat (Lasiorhinus latifrons) using whole mitochondrial genomes to determine whether genetic diversity is still low; 2) using fecal samples to characterize diet and microbiome, and search for pathogens; 3) developing a science communication program; and, 4) incorporating indigenous communities and histories. 

Salix Scoresby

Master's Student

2023-2024 MITSI Fellow

2024 Award: Les Eberhadt Award for best student presentation, Oregon TWS

Anna Riley

Undergraduate Student Researcher, Species from Feces Team; Ancient DNA Lab Manager

2022 Award: NAU's Jean Shuler Mini Research Grant

I am an Honors student studying biology with a minor in criminal justice. I joined PMI in spring 2022 as a member of the Bat Ecology and Genetics Lab (BEGL), where I work as part of the Species From Feces team. I am also the Undergraduate Lab Manager of the Ancient DNA lab. There, I will study 30,000 year old bat mummies collected in the Grand Canyon. Through my work here I am gaining experience in working with damaged, partial, and trace DNA, which will aid me as I pursue a career in forensic science after college. 

Ellen Liebig

Undergraduate Student Researcher

2023 Awards:  Intern to Scholar; Nancy and Henry Wettaw Organic Chemistry Scholarship; Farrell Family Scholarship; Chemistry and Physics Award for Female or Underrepresented Students; Distinguished Scholars Award Endowment; NAU Honors Merit Scholarship 

2024 Award: Jean Shuler Research Mini-Grant

I am currently a NAU Honors student double majoring in environmental sciences with an emphasis on biology and chemistry with an emphasis on biochemistry. I joined the Species from Feces team at the Pathogen and Microbiome Institute in the spring of 2023 as an undergraduate student researcher through the Interns-to-Scholars program.  Learning how to use DNA processing equipment and analyze results during my time at NAU will give me hands-on experience and help me develop the skills needed to pursue medical research after my undergraduate studies. 

Kiera Majzner

Undergraduate Student Researcher; Social media guru

2023 Awards: NAU Nackard Family Scholarship; NAU Environmental Science Scholarship 

I am a sophomore NAU Honors student majoring in Environmental Science with an emphasis in biology. I joined the Pathogen and Microbiome Institute (PMI) as an undergraduate researcher in spring 2023 and am working on Species from Feces projects within the Walker Lab. By virtue of my work with Species from Feces, I am gaining experience in DNA extraction from environmental DNA sources and am learning how this technology is pivotal to species identification as well as what implications this may have. This research experience will be valuable as I pursue a future career in wildlife conservation. 

ADDITIONAL GRADUATE ADVISORY COMMITTEES

Phoebe Reuben, Tulane University

Sarah Ciarrachi, NAU

RESEARCH ASSISTANT

Savannah Marriott

I am a Research Assistant whose primary focus is the Species From Feces project.  Before joining the Bat Ecology and Genetics Lab, I worked at the Translational Genomics Research Institute where I engaged in assay development to better understand the molecular mechanisms of Parkinson's Disease. Later, I joined W.L. Gore & Associates, where I worked in R&D to improve the biocompatibility of materials in medical devices. Now I am excited to take the experience I gained using molecular biology techniques in those settings to support the capabilities of Dr. Faith Walker's team in aiding wildlife conservation efforts. 

LAB ALUMNI

Emma Froehlich

Before starting as a Research Technician at PMI, I worked for the Forest Service and the National Parks Service in Alaska, the Cascades, Yellowstone and most recently Olympic National Park as a Biological Science Technician where I performed coastal surveys, population studies, and gathered limnological data up at remote mountain lakes. During my undergraduate degree at the University of Arizona, I worked in a Conservation Genetics Lab. I currently am assisting with a rabies project that is showing progress in detecting the rabies virus in fecal samples rather than the more invasive method of gathering brain tissue. Additionally, I am working on the Species From Feces Team to conduct DNA metabarcoding to identify species and determine diet for a wide range of taxa. I also work for Dr. Jeff Foster’s team, applying a genetic assay on wing swabs and feces to test for the fungus that causes white-nose syndrome in bats. 

Emma Federman

  Head Undergrad, Team eDNA, Species from Feces Team 

2021, 2022: Intern to Scholar

2023 Award: 1st place at The Wildlife Society AZ/NM JAM Conference for poster presentation.

I am in the NAU Honors College, pursuing a major in Biomedical Sciences and a minor in Psychology. I started working at the Pathogen and Microbiome Institute (PMI) with the Bat Ecology & Genetics Lab (BEGL) in the summer of 2021 and will continue into the school year as an Interns2scholar undergraduate. My current projects include the testing and applying of qPCR assays on fecal DNA to determine diet and on environmental DNA to detect species presence. I will: 1) determine whether or not predatory sportfish, such as the largemouth bass (Micropterus salmoides) may be contributing to population declines of the threatened northern Mexican garter snake (Thamnophis eques megalops); 2) determine the diet of this snake at Lake Roosevelt, AZ; and, 3) identify the endangered Mexican long-nosed bat (Leptonycteris nivalis) from environmental DNA found on agave flowers. I will also assist with the Species from Feces program, which uses fecal DNA to identify communities for wildlife conservation and management. Additionally, I have helped to develop and run social media accounts for our Species from Feces program. I will work at BEGL throughout my undergraduate career at NAU, where I will gain a hands-on education in molecular conservation, before going to pursue a Master’s focused on genetics. 

Meagan Owens

Undergraduate Student Researcher, Team eDNA, Species from Feces Team; Social media guru

2022 Award: Jean Shuler Mini-Grant

2023 Award: NAU Award for Excellence in Undergraduate Inquiry & Creativity 

I am an undergraduate researcher majoring in biology with a minor in chemistry, and I am earning a Wildlife Ecology and Management Certificate. I am passionate about wildlife conservation and the importance of communication as a tool to facilitate it. My position within the Walker Lab includes work in the Species from Feces program at the Pathogen and Microbiome Institute under the Bat Ecology and Genetics Lab. I complete Sanger sequencing for bat species IDs using DNA extracted from bat fecal matter, bat tissue, and the environment. My newest project is on the detection of the threatened northern Mexican gartersnake through environmental DNA (eDNA) and fecal DNA. The completion of this research will provide more information about predation on this species by non-native sportfish, thereby aiding in the management and conservation of the species. Additionally, I perform public and client outreach, in part by running our Species from Feces Team’s social media. Following my undergraduate career, I will be earning a master’s degree in wildlife biology in order to pursue a career in wildlife conservation and management. Prior to earning my master’s degree, I will be gaining fieldwork experience as a biological technician. 

José Gabriel Martinez-Fonseca

Ph.D. Student, completed May 2022

2020: BCI Student Research Scholarship 

In 2018 I started a PhD program at NAU after 12 years working with amphibians, reptiles, bats and other small mammals in my home country, Nicaragua. My research focused on better understanding how different species of bats responded to forest fragmentation and how they moved in altered landscapes. To achieve this, I incorporated different techniques like geographic information systems, machine learning, acoustic monitoring, genetics, and telemetry. I expect the products of my research to positively impact the management of the landscape to promote conservation of bat diversity and ecosystem health. 

Dan Sanchez

Ph.D. Student, completed December 2021

2021: AZTWS Roger Hungerford Student Award 

2017-2020: National Science Foundation Graduate Research Fellow 

2018-2020: ARCS Scholarships

I use cutting edge genetic and computational tools to study conservation ecology and evolution in wildlife systems. After helping develop Species from Feces in the laboratory, I focused my research on understanding the historical biogeography of the spotted bat as well as designing a metabarcode assay for identifying diet of the endangered New Mexico meadow jumping mouse. Some of the skills that I employed for these projects included next-generation sequencing, microbiome bioinformatics, phylogenetics, ecological niche modeling, and bacterial and fungal microbiology. I was awarded an NSF graduate research fellowship to complete my PhD.  My dissertation was entitled "HIERARCHICAL ASSESSMENTS OF GENE FLOW FOR CRYPTIC AND ENDANGERED MAMMALS".  Three papers will be published from this work.

Colin J. Sobek

Genetics Research Specialist, 2014-2021

I worked with non-invasive genetic samples for 10 years, first at PMI as an undergraduate, and then with the School of Forestry’s Bat Ecology & Genetics Lab. I managed the Ancient DNA Lab, performed our Species from Feces services, and was involved in a suite of different projects. My skills include DNA extraction and amplification from severely degraded sample types, next-generation amplicon sequencing, and bioinformatics. My favorite projects included extracting DNA from a 10,000 year old spotted bat mummy, chasing wombat DNA in South Australia, developing an eDNA sampling protocol to detect bat species from water sources, and determining what bat species used two Mayan temples. I enjoyed communicating our exciting research to STEM students.  I was accepted into the PhD program at the University of Adelaide to work on a wombat genetics project, and left for Australia in 2021.

Jordyn Upton 

    Undergraduate Genetics Researcher - Team Wombat, Team Rabies, Species from Feces Team

2021: The Keim Award for Excellence in Undergraduate Research, Gold Axe Award, Runner-up for best poster at the American Society for Microbiology Branch Meeting 

2020: Entomological Society of Helsinki Research Grant; 2020-2021 Hooper Undergraduate Research Award 

2019: Selected for Council on Undergraduate Research Posters on the Hill, Washington, DC; National Conference on Undergraduate Research, Kennesaw State University; NAU Biology’s Drickamer-Montgomery Award 

2018: RCN g2p2pop Lab Exchange Fellow to South Australia; NAU Intern2Scholar; Poster Winner at the 20th Anniversary Wombat Conference in Adelaide, South Australia; Recipient of an Office of Undergraduate Research Mini Grant 

2017: NAU Intern2Scholar

I graduated from NAU in April 2021, where I was a part of the honors program, and pursued a double major in Biology and Spanish with a minor in Chemistry. I began working with the Bat Ecology & Genetics Lab (BEGL) in 2017 through the Intern2Scholars program, successfully organizing thousands of bat team genetic samples in -80C freezers and refining our Access database (‘BEGLbase’). I conducted the genetic portion of a follow-up study to Dr. Walker’s Ph.D. research in the early 2000s, in order to uncover the population dynamics of South Australia’s southern hairy-nosed wombat (Lasiorhinus latifrons), and see how the population has changed over time. This is described in our 2020 paper. My final project employed a molecular assay to detect rabies through minimally invasive sample types. In addition, I assisted with bat Species from Feces projects, which involve the identification of bat species from guano using a DNA mini-barcode assay. I started a Master’s program at Kennesaw State University in Fall 2021. 

Jacqueline Lyman 

    Undergraduate Genetics Researcher - Jumping mouse team, Team Lizard

2021: Gold Axe Award, NAU President’s Prize Recipient, Outstanding Researcher Award 

2020: NAU Biology’s Kenneth Derifield Award 

2019: NAU Biology's Pacius Award

2018: Recipient of an Office of Undergraduate Research Mini Grant 

I graduated from NAU in April 2021, where I pursued a double major in Biology and Spanish with a minor in Chemistry. As an undergraduate research assistant at the Pathogen and Microbiome Institute (PMI) with the Bat Ecology & Genetics Lab, my research focused on the genetic barcoding of plants that are important to the herbaceous diet of the endangered New Mexico meadow jumping mouse (Zapus hudsonius luteus). Currently, our barcoding efforts have genus-level resolution; I barcoded plants that were collected from jumping mouse habitat in order to identify taxa down to the species level. These results will help us understand what plant species are important to jumping mice and will help land managers promote protection of these plant communities. In addition, I assisted with bat Species from Feces projects, which involve the identification of bat species from guano using a DNA mini-barcode assay. Working at the School of Forestry and PMI expanded my understanding of ecological and genetic research; In Fall 2021, I started a dual Ph.D. in molecular biology and an M.S. in genetic counseling at the University of Minnesota. 

Samantha Hershauer 

    Undergraduate Genetics Researcher - Ancient DNA Core

2020: Accepted into the PhD program at UC Santa Cruz

2019: Hooper Undergraduate Research Award; Jean Shuler Research Mini-Grant; NAU Biology's Slipher Award and Bayless Award 

2018: Hooper Undergraduate Research Award, NAU/NASA Space Grant Undergraduate Research Intern,  and Jerry O Wolf Student Enrichment Scholarship 

I graduated from NAU in May 2020 with a degree in Biology. As a 3 year member of the Ancient DNA Core, my projects started in the Ancient DNA Lab, where I handled and extracted DNA from sensitive samples, and finished at PMI, where I amplified gene targets of interest. For my main project, I extracted DNA from sediment cores and used metagenomics and metabarcoding to identify plant and animal species in order to understand past ecosystems. I am preparing a first author paper describing detection of moose from sediment cores of a lake on the Kenai Peninsula in Alaska. Additionally, I assisted with the Bat Ecology & Genetics Lab’s Species from Feces projects, which involved analyzing DNA from bat guano to reveal the species that produced it. This technique is noninvasive, and the information gathered from the process is used to help track, understand, and protect bats species.  I started a PhD program with Dr. Beth Shapiro at UC Santa Cruz in fall 2020.


Austin Dikeman

    Undergraduate Genetics Researcher

2019: Internship at the Curie Institute in Paris; NAU Golden Axe Award

2018: Goldwater Scholar; Paul A. Sciame Scholarship; NAU Award of Excellence in Undergradute Inquiry & Creativity; NAU UGRADS 3rd place; Head Undergraduate at PMI.

2017: Recipient of 2017-2018 Hooper Undergraduate Research Award; 2nd Place in student presentations at The Wildlife Society Joint Annual Meeting.

I graduated from NAU in December 2019 with a Bachelor of Science in Biology, Bachelor of Arts in French, and a minor in Chemistry. As a 3 year member of the School of Forestry’s Bat Ecology and Genetics Lab, I performed research that applied noninvasive genetics and genomics to wildlife conservation. I conducted my work at the Pathogen & Microbiome Institute (PMI) using next-generation sequencing to inform management of the endangered New Mexico meadow jumping mouse (Zapus hudsonius luteus). I was awarded a HURA to study E. coli infections that serve as a potential threat to jumping mice. I also helped develop a genetic method to identify herbivore diet. This system has informed management for wildlife such as jumping mice, mule deer, and pronghorn. PMI and the School of Forestry provided stimulating environments to pursue my passion for conservation in an exciting new way through genetics. I plan to pursue a PhD in molecular genetics and continue my career in research.

Clarissa Starbuck (Completed in Spring 2019) 

Ph.D. student

Clarissa conducted a risk analysis of wind facility development to bats in northern Arizona by identifying areas of high risk via acoustic monitoring and bat capture. She identified migration patterns and routes, characterized the bat community, and located key roost sites, which will allow resource managers to identify options to protect habitat for bats in proximity to wind development sites. This work is important because four factors in northern Arizona create the potential for serious impacts to bat populations if risks are not carefully identified prior to construction of wind facilities: 1) the diversity of bats in the area (≥20 species), 2) the unique types and numbers of roost sites found in canyon areas such as the >300 km long Grand Canyon, 3) the moderate climate that allows year-round occupation and activity for some bat species, and, 4) the use of northern Arizona as flyways for migratory species such as Mexican free-tailed bat (Tadarida brasiliensis). 

Clarissa is now a postdoc at Indiana State University.

Abby Tobin (Completed in Spring 2016) 

Master's student

2015 Dixie Pierson Scholarship Award.  

Abby examined the effects of gating mines on bat use and activity, a project funded by the BLM and Bat Conservation International. Abandoned mines in the Four Corners region of the western U.S. are likely to be gated if they provide habitat for bats. However, these gates have protected sensitive habitat at some sites but caused declines in others. Abby determined which gate characteristics are detrimental or positive to bat activity. As part of this project, we performed DNA barcoding of fecal samples found in mines to identify bat species that use them.  Abby is now White-nose Syndrome Coordinator at the Washington Department of Fish & Wildlife.

Cami Platts

   Undergraduate Genetics Researcher

2014: Best Student Poster Award at The Wildlife Society's Joint Annual Meeting in Pinetop, Arizona

2013: recipient of NAU's Hooper Undergraduate Research Award

Cami Platts

Cami  dovetailed  radio-telemetry with genetic tools to examine genetic relatedness within maternity colonies of big brown bats (Eptesicus fuscus) in an area with repeated rabies outbreaks.  She achieved this entirely by DNA procured from buccal swabs (pictured).

Anna Riley

Undergraduate Student Researcher, Ancient DNA Lab Manager